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Web Sites
PPS People,
I browse the web more than most. As the Internet Resource Person for the Our
World Underwater Scholarship Society, I am constantly searching the web for
web sites and free (or nearly so) Windows based software applications. I
furnish scuba and scuba-related science site lists to a variety of
international organizations and web pages.
Since we have started a unit on bioinformatics, I am sending you a list of
"bio-sites" in the hopes that at least some of these will be new or novel to
you.
I am willing to share, for anyone interested, via e-mail request, my current
(changes daily) list of about 8000 links as an htm file (about 900 K -
strongly biased and organized to MY NEEDS - a male biochemist living in Ann
Arbor, MI (USA), scuba diving the US Great Lakes with a lot of varied
scientific (and science fiction) interests.)
These links were last validated in Dec, 1999.
I hope these are useful!
Compute long and prosper,
lpt
Chemistry-Modeling
Animated BioMolecules -
http://klaatu.oit.umass.edu/microbio/rasmol/scripts.htm
Animations - http://art.osaka-med.ac.jp/~center/molgra/molani.html
Applications Group - http://www.mag.com/
Asterix Molecular Mechanics - http://asterix.jci.tju.edu/
BioMagResBank - http://bimas.dcrt.nih.gov/sql/BMRBgate.html
Biomolecules (Harvard) - http://golgi.harvard.edu/sequences.html
Biotech's Graphics Gallery - http://www.gene.com/ae/AB/GG/index.html
Bloomsbury Centre for Structural Biology -
http://www.biochem.ucl.ac.uk/~mason/bcsb/index.htm
Carbohydrate Links -
http://www.public.iastate.edu/~pedro/carbhyd/carbhyd.html
Chemical Models (BGSU) -
http://ernie.bgsu.edu/~midden/MITBCT/chem/models.html
Common Molecules - http://www.iumsc.indiana.edu/common/common.html
Computational Chemistry - http://gutenberg.llnl.gov/~colvin/intro/intro.html
CORD - http://www.opioid.umn.edu/
Crystallography Links - http://www-mslmb.niddk.nih.gov/procryst.html
Crystallography, Birkbeck College - http://www.cryst.bbk.ac.uk/
Crystallography-Cambridge - http://www.ccdc.cam.ac.uk/
CSIRO (Au) - http://www.molsci.csiro.au/
Culling the PDB - http://www.fccc.edu/research/labs/dunbrack/culledpdb.html
Database-Biomolecular Structures -
http://ndbserver.rutgers.edu/NDB/index.html
Database-Conserved Residues - http://www.blocks.fhcrc.org/
Database-GPCR (EMBL) - http://swift.embl-heidelberg.de/7tm/
Database-GPCR Catalog - http://www.infobiogen.fr/services/dbcat/
Database-GPCR Ki - http://129.22.152.107/PDSP%20www/qPDSP.HTML
Database-GRAP Mutant - http://tinygrap.uit.no/queryform7.html
Database-Ligand Gated Ion Channel -
http://www.pasteur.fr/units/neubiomol/LGIC.html
Database-Macromolecular Movements - http://bioinfo.mbb.yale.edu/MolMovDB/
Database-MIPS Protein - http://www.mips.biochem.mpg.de/
Database-ModBase (Protein Models) - http://guitar.rockefeller.edu/modbase/
Database-Molecular (Klotho) - http://www.ibc.wustl.edu/klotho/
Database-Molecules R Us - http://molbio.info.nih.gov/cgi-bin/pdb
Database-Motif-PRINTS -
http://www.biochem.ucl.ac.uk/bsm/dbbrowser/PRINTS/PRINTS.html
Database-PDB (EMBL) - http://www2.ebi.ac.uk/pdb/
Database-PDB (RCSB) - http://www.rcsb.org/pdb/
Database-PDBsum - http://www.biochem.ucl.ac.uk/bsm/pdbsum/
Database-Peptaibol - http://www.cryst.bbk.ac.uk/peptaibol/welcome.html
Database-PFAM (Sanger) - http://www.sanger.ac.uk/Software/Pfam/
Database-PIR - http://www-nbrf.georgetown.edu/
Database-Protein Families (PFAM) - http://www.sanger.ac.uk/Pfam/
Database-RasMol Gallery -
http://klaatu.oit.umass.edu/microbio/rasmol/gallery.htm
Database-RasMol Molecules -
http://www.sci.ouc.bc.ca/chem/molecule/molecule.html
Database-RCSB Protein - http://www.rcsb.org/pdb/
Database-ReLiBase - http://rcsb.rutgers.edu:8081/
DNA-Binding Proteins -
http://www.teaching-biomed.man.ac.uk/mccluskey/4.table.htm
ECTOC Hyperglossary - http://www.ch.ic.ac.uk/ectoc/glossary/
Exorga - http://ourworld.compuserve.com/homepages/exorga/
Fold Recognition Server (UCLA) - http://www.doe-mbi.ucla.edu/
Form Of Function (Weinstein) -
http://www.tc.cornell.edu/er/sci93/dis34function/dis34function.html
GCG documentation - http://nick.med.usf.edu/GCGdoc/Doc.html
G-Protein Transduction -
http://freehosting.at.webjump.com/gp/gprotein-webjump/gprotein.htm
Graphics (Scripps) - http://www.scripps.edu/pub/olson-web/index.html
History of Molecular Visualization -
http://klaatu.oit.umass.edu/microbio/rasmol/history.htm
HMMTOP (Topology Predictions) - http://www.enzim.hu/hmmtop/
Hyperactive Molecules - http://www.ch.ic.ac.uk/chemical_mime.html
Image of the Week Archives - http://www.sdsc.edu/IOTW/archives.html
Ion Channel Excitability - http://pb010.anes.ucla.edu/
Ion Channels - http://members.xoom.com/IonChannel/
Large Molecules - http://esg-www.mit.edu:8001/esgbio/lm/lmdir.html
Macromolecular Museum (CLU) - http://www.clunet.edu/BioDev/omm/gallery.htm
Macromolecular Museum (Kenyon) -
http://www.kenyon.edu/depts/bmb/chime/gallery.htm
Making Matter - http://www.ill.fr/dif/3D-crystals/index.html
Mfold (DNA) Server - http://mfold.burnet.edu.au/
Modeling (CMC) - http://cmcind.far.ruu.nl/webcmc/
Modeling (EMBL) - http://www.embl-heidelberg.de/
Modeling (Mosberg) - http://www-personal.umich.edu/~him/
Modeling (NCI) - http://www.nci.nih.gov/intra/lmb/mms.htm
Modeling (NIH) - http://cmm.info.nih.gov/modeling/
Modeling (NYU) - http://www.nyu.edu/pages/mathmol/quick_tour.html
Modeling (Ponder) - http://dasher.wustl.edu/
Modeling (Tokyo) - http://triton.ps.toyaku.ac.jp/~dobashi/english/index.html
Modeling (UCL) - http://www.biochem.ucl.ac.uk/bsm/biocomp/index.html
Modeling (Viseur) - http://www.lctn.u-nancy.fr/viseur/viseur.html
Modeling (Wilson-Squier) - http://www-wilson.ucsd.edu/
Modeling (YSBL) - http://www.yorvic.york.ac.uk/
Modeling Toolbox (GUSE) - http://webnet.mednet.gu.se/chemistry/molmod/
Molecular Dynamics Links - http://www-dmse.mit.edu/courses/3.320/md.html
Molecular Medicine - Emory - http://infinity.gen.emory.edu/
Molecular Modeling Resources (Gregg) -
http://seqlab.ceh.uvic.ca/students/gstuart/MolecModel.htm
Molecular Modeling - http://www.ch.ic.ac.uk/local/organic/mod/
Molecular Models for Biochemistry (CMU) -
http://info.bio.cmu.edu/Courses/BiochemMols/BCMolecules.html
Molecular Orgami -
http://www.tc.cornell.edu/er/sci93/dis22origami/dis22origami.html
Molecular Structure Center (U I) - http://www.iumsc.indiana.edu/
Molecular Surface Calc -
http://www.scripps.edu/pub/olson-web/people/sanner/html/msms_home.html
Motif Bioinformatics - http://dna.stanford.edu/motif/
Motif-Alacoil - http://r703a.chem.nthu.edu.tw/~ichu/a-coil.html
NCSA - http://www.ncsa.uiuc.edu/
Opioid Receptors (Weinstein) -
http://www.mssm.edu/physbio/local/weinstein/dan_paper.html
Oxford Molecular - http://www.oxmol.com/
Pedestrian guide to analysing sequences -
http://www.embl-heidelberg.de/~rost/Papers/Springer96.html
Perspectives (Weinstein) -
http://www.mssm.edu/physbio/local/weinstein/WEINSTEIN.html
PPS '99-'00 Self Assessment -
http://pps9900.cryst.bbk.ac.uk/course/self-assess/index.html
PPS-Home - http://pps9900.cryst.bbk.ac.uk/
PPS-Home99 - http://pps99.cryst.bbk.ac.uk/index.html
PPS-Mail Index - http://pps9900.cryst.bbk.ac.uk/discuss/maillist.html
PPS-MUD Command Manual - http://mud.cryst.bbk.ac.uk:6006/help.html
PPS-MUD - http://shuna.cryst.bbk.ac.uk:6006/
PPS-Springboard to the World -
http://www.cryst.bbk.ac.uk/external_links.html
Protein Folding Lab (U of MI) - http://www.umich.edu/~protein/index.html
Protein Folding - http://www.tcm.phy.cam.ac.uk/~mmlk2/report13/node25.html
Protein Kinase Resource - http://www.sdsc.edu/Kinases/pkr/pk_whatsnew.html
Protein Loop Classification - http://www.bmm.icnet.uk/loop/
Protein Motions Movies -
http://bioinfo.mbb.yale.edu/MolMovDB/simple-gallery.html
Protein NMR Structure Gallery -
http://www-nmr.cabm.rutgers.edu/~gardino/index.html
Protein Science Resources -
http://www.faseb.org/protein/ProSciDocs/WWWResources.html
Protein Structure Analysis Course (U MI) -
http://london.biology.lsa.umich.edu/courses/bio411/
Protein Structure Prediction Center - http://predictioncenter.llnl.gov/
Protein Structure Syllabus (SE) -
http://www.biokemi.su.se/~arne/kurser/distanskurs_1998/text/
Rendering Techniques (Geneva) - http://scsg9.unige.ch/fln/eng/toc.html
Resource-GR - http://nrr.georgetown.edu/GRR/GRR.html
Resource-Nuclear Receptor - http://nrr.georgetown.edu/nrr/nrr.html?31,24
Resource-Thyroid Hormone Receptors -
http://xanadu.mgh.harvard.edu/receptor/trrfront.html
Secondary Structure Prediction Sites -
http://absalpha.dcrt.nih.gov:8008/otherservers.html
Sequence Analysis (Boston) - http://bmerc-www.bu.edu/psa/
Simulations (MSI) - http://www.msi.com/
Sisyphus & Protein Sructure -
http://www.embl-heidelberg.de/~rost/Papers/ISMB97-tut.html
Software List - http://cwis.nyu.edu/pages/mathmol/software.html
Software-ADS - http://www.embl-heidelberg.de/~gabdoull/ads/ads.html
Software-AMBER - http://www.amber.ucsf.edu/amber/amber.html
Software-ANTHEPROT - http://www.ibcp.fr/ANTHEPROT/
Software-Auto Dock - http://www.scripps.edu/pub/olson-web/people/gmm/
Software-Babel - http://www.eyesopen.com/babel.html
Software-Biomer - http://www.scripps.edu/~nwhite/Biomer/index.html
Software-CHARMM - http://yuri.harvard.edu/
Software-CHIME - http://www.mdli.com/download/
Software-ConsInspector - http://www.gsf.de/biodv/consinspector.html
Software-DINO - http://www.biozentrum.unibas.ch/~xray/dino/
Software-Dragon - http://www.nimr.mrc.ac.uk/~mathbio/a-aszodi/dragon.html
Software-GAMESS - http://www.msg.ameslab.gov/GAMESS/GAMESS.html
Software-MAGE - http://kinemage.biochem.duke.edu/website/kinhome.htm
Software-MODELLER - http://guitar.rockefeller.edu/modeller/modeller.html
Software-Molecular Images - http://www.cris.com/~Molimage/
Software-Molecular Modelling Toolkit -
http://starship.python.net/crew/hinsen/mmtk.html
Software-MolScript - http://www.avatar.se/molscript/molscript.html
Software-MolSurfer -
http://www.embl-heidelberg.de/ExternalInfo/wade/pub/soft/molsurfer.html
Software-MPSA - http://ibcp.fr/mpsa/
Software-Paircoil - http://theory.lcs.mit.edu/~bab/paircoil.html
Software-PAWS - http://www.proteometrics.com/software/paws.htm
Software-PC Molecule - http://www.molvent.com/
Software-PDB3D Viewer - http://www.doe-mbi.ucla.edu/people/legrand/pdb.html
Software-PROCHECK -
http://www.biochem.ucl.ac.uk/~roman/procheck/procheck.html
Software-PROCHECK-NMR -
http://www.biochem.ucl.ac.uk/~roman/procheck_nmr/procheck_nmr.html
Software-Protein Explorer - http://www.umass.edu/microbio/chime/explorer/
Software-Protein Tools - http://www.chemsw.com/16016.htm
Software-ProteinProspector (MS Fit) - http://prospector.ucsf.edu/
Software-Prowl - http://prowl.rockefeller.edu/
Software-PUZZLE - http://members.tripod.de/korbi/puzzle/
Software-RasMol EMail List -
http://www.umass.edu/microbio/rasmol/listsub.htm
Software-RasMol Programs -
http://www.umass.edu/microbio/rasmol/rasras.htm#galore
Software-RnaDraw - http://rnadraw.base8.se/
Software-RnaViz - http://rrna.uia.ac.be/rnaviz/
Software-Swiss-PdbViewer - http://www.expasy.ch/spdbv/
Software-TINKER - http://dasher.wustl.edu/tinker/
Software-Tripos - http://www.tripos.com/
Software-Visualize - http://www.compbio.net/downloads/visualize/index.html
Software-VMD (Beckman) - http://www.ks.uiuc.edu/Research/vmd/
Software-WebLab Viewer - http://www.msi.com/viewer/
Software-What If - http://swift.embl-heidelberg.de/whatif/
Software-WinPep -
http://www.biologie.uni-freiburg.de/data/schaefer/lhennig/winpep.html
Species-Specific Protein Searches -
http://dot.imgen.bcm.tmc.edu:9331/seq-search/protein-search-genomes.html
Steroid Receptor Associated Proteins -
http://www.mco.edu/depts/pharm/srapr.html?
Structure Based Drug Design (Villar) -
http://129.43.50.12/tmmec/V1I1-1997/CURRENT_REVIEWS/hugo_villar/hugo.htm
Theoretical Chemistry - http://user.mc.net/~buckeroo/index.html
Tools-Biotech Validation - http://biotech.embl-ebi.ac.uk:8400/
Tools-CINEMA - http://www.biochem.ucl.ac.uk/bsm/dbbrowser/CINEMA2.1/
Tools-Coiled Coils -
http://www.biols.sussex.ac.uk/Biochem/Woolfson/html/coiledcoils.html
Tools-DAS Transmembrane - http://www.biokemi.su.se/~server/DAS/
Tools-Docking - http://www.scripps.edu/pub/olson-web/people/gmm/
Tools-ExPASy - http://www.expasy.ch/tools/
Tools-LAMA Search - http://blocks.fhcrc.org/blocks-bin/LAMA_search
Tools-Loop Homology - http://www.lmcp.jussieu.fr/~wojcik/modele/loop.html
Tools-Molecular Analysis -
http://www.microbiology.adelaide.edu.au/learn/index.htm
Tools-MolSurfer - http://www.embl-heidelberg.de/~gabdoull/ads/imap/
Tools-PDB 2 Serquence -
http://www.bimcore.emory.edu/Tutorials/homology/aa.html
Tools-PeptideMass - http://expasy.nhri.org.tw/tools/peptide-mass.html
Tools-Predict Protein (DE) -
http://www.embl-heidelberg.de/predictprotein/predictprotein.html
Tools-Prediction Servers (CBS) - http://www.cbs.dtu.dk/services/
Tools-Procheck - http://biotech.embl-ebi.ac.uk:8400/
Tools-SALSA - http://dna.uio.no/salsa/
Tools-SCOP - http://scop.mrc-lmb.cam.ac.uk/scop/
Tools-Sequence (NIH) - http://webasaurus.dcrt.nih.gov/molbio/analysis.html
Tools-SOSUI - http://azusa.proteome.bio.tuat.ac.jp/sosui/
Tools-TRESPASSER (Leu Zipper) -
http://www.scripps.edu/brooks/jhirst/trespasser.html
Topology-Formalizing - http://www3.ebi.ac.uk/~drg/epsrc-vf/epsrc-vf.html
Tutorial-Chime - http://klaatu.oit.umass.edu/microbio/rasmol/tutbymol.htm
Tutorial-Conformational Likeness -
http://www.unl.edu/stc-95/Kinases/pkr/3D/compare/cl/cl.html
Tutorial-Membranes - http://www-medlib.med.utah.edu/NetBiochem/membrane.htm
Tutorial-Models for Biochemistry (CMU) -
http://info.bio.cmu.edu/Courses/BiochemMols/BCMolecules.html
Tutorial-Molecular dynamics - http://www.sissa.it/furio/md/
Tutorial-Molecular Modeling -
http://www.netsci.org/Science/Compchem/feature01.html
Tutorial-Protein Geometry -
http://bioinfo.mbb.yale.edu/MolMovDB/geometry/csb-seminar/
Tutorial-Protein Structure & Stability -
http://wine1.sb.fsu.edu/bch5887/bch5887.html
Tutorial-RasMol Modeling -
http://www.usm.maine.edu/~rhodes/GraphicsGallery/RasTut.html
Tutorial-RasMol - http://www.umass.edu/microbio/rasmol/rastut.htm
Tutorial-SGI (Cambridge) - http://www.ch.cam.ac.uk/SGTL/
Tutorial-Structure Prediction - http://www.bmm.icnet.uk/people/rob/CCP11BBS/
Tutorial-SYBYL - http://www.kncv.nl/tutorials/studs/sybyl/index.html
Molecular Biology
@Genetics - http://atgenetics.com/genetics/
AAA Superfamily-Protein Evolution -
http://yeamob.pci.chemie.uni-tuebingen.de/Default.html
Algorithms In Molecular Biology (Ruzzo) -
http://www.cs.washington.edu/education/courses/590bi/98w/
Alkami Biosystems - http://www.alkami.com/
Animal Rights - http://www.animalrights.net/
Animals-Flies -
http://www.exploratorium.edu/exhibits/mutant_flies/mutant_flies.html
Animals-Fly Interactive - http://sdb.bio.purdue.edu/fly/aimain/1aahome.htm
Animals-Hamster House - http://www.geocities.com/Heartland/Bluffs/4157/
Animals-Hamsters - http://www.hamsters.co.uk/
Animals-Mice Gene Knockouts (Nervous) -
http://www.nida.nih.gov/genetics/ko/ko-07.html
Animals-Mouse Brain Atlas - http://www.nervenet.org/mbl/mbl.html
Animals-Mouse Genome Dictionary -
http://www.nervenet.org/main/dictionary.html
Animals-Mouse Genome Project (Baylor) - http://www.mouse-genome.bcm.tmc.edu/
Animals-Rat Brain Atlas - http://www.loni.ucla.edu/data/rat/index.html
Animals-Rodents (Net Vet) - http://netvet.wustl.edu/rodents.htm
Animals-Whole Mouse Catalog - http://www.rodentia.com/wmc/
Art's Biotechnology Resource - http://www.ahpcc.unm.edu/~aroberts/
Bio Warfare 2 -
http://www.mitretek.org/mission/envene/biological/bio_back.html
Bio Warfare - http://www.pbs.org/wgbh/pages/frontline/shows/plague/
BioChemNet Biotechnology - http://schmidel.com/bionet/biotech.htm
Biocomputing (VSVN) - http://www.techfak.uni-bielefeld.de/bcd/welcome.html
BioComputing Biblio (Allison) - http://www.cs.monash.edu.au/~lloyd/tildeBIB/
Biocomputing Course Resources -
http://www.techfak.uni-bielefeld.de/bcd/Curric/biblio.html
Biocomputing Glossary - http://www.cryst.bbk.ac.uk/BCD/bcdgloss.html
Bioinform - http://www.bioinform.com/
Bioinformatics (Au) - http://life.anu.edu.au/index.html
Bioinformatics (Boston) - http://bioinformatics.bu.edu/
Bioinformatics (Brutlag) - http://motif.stanford.edu/
Bioinformatics (Canadian) - http://www.cbr.nrc.ca/
Bioinformatics (CCP11) - http://www.hgmp.mrc.ac.uk/CCP11/
Bioinformatics (Danish) - http://biobase.dk/cgi-bin/celis/
Bioinformatics (EMBL) - http://www.embl-heidelberg.de/
Bioinformatics (GMU) -
http://www.science.gmu.edu/~michaels/Bioinformatics/index.text.html
Bioinformatics (Karolinska) - http://www.cbb.ki.se/index.html
Bioinformatics (MI) - http://www.bioinformatics.med.umich.edu/index.html
Bioinformatics (Murdocj) - http://arginine.it.murdoch.edu.au/
Bioinformatics (Pune) - http://bioinfo.ernet.in/
Bioinformatics (Swiss Institute) - http://www.isb-sib.ch/
Bioinformatics (Toronto) - http://www.bioinfo.sickkids.on.ca/
Bioinformatics (UCLA) - http://www.bioinformatics.ucla.edu/
Bioinformatics (Weizmann) - http://bioinformatics.weizmann.ac.il/
Bioinformatics Institute-SA - http://www.sanbi.ac.za/Dbases.html
Bioinformatics Library - http://www.oxmol.com/biolib/
Biological Sciences (Cambridge) - http://www.bio.cam.ac.uk/
Biology Hypertextbook (MIT) -
http://esg-www.mit.edu:8001/esgbio/7001main.html
Biology Links (Harvard) - http://mcb.harvard.edu/BioLinks/biochem.html
Biology Project (U Az) - http://www.biology.arizona.edu/
Biology Slide List - http://darwin.clas.virginia.edu/~rjh9u/slidlist.html
Biology WorkBench - http://biology.ncsa.uiuc.edu/
BioMedNet - http://biomednet.com/
Bionet - http://www.bio.net/
Bioportfolio - http://www.bioportfolio.com/
Biopython - http://www.biopython.org/
BioRAP - http://www.biorap.org/
BioResearch Online - http://news.bioresearchonline.com/
BioSpace - Biosciences Hub - http://www.biospace.com/
Biotech Rumor Mill - http://www.biofind.com/rumor/
BioTech - http://biotech.icmb.utexas.edu/
Biotechniques Archive -
http://tantalum-e2.hgmp.mrc.ac.uk/hypermail/BIOTECHNIQUES/
Biotechnology (Scotland) - http://www.sebiotech.org.uk/
Biotechnology Industry Organization - http://www.bio.org/welcome.html
Biotechnology Knowledge Center - http://www.biotechknowledge.com/
Bugs on the Web - http://bugs.uah.ualberta.ca/webbug/index.htm
Cancer Genetics Branch (NIH) -
http://www.nhgri.nih.gov/Intramural_research/Lab_cancer/
Cell & Molecular Biology Resources - http://www.cellbio.com/
Cell Control Pathways - http://www.genome.ad.jp/brite/map_human.html
Cell Navigator - http://www.dcn.davis.ca.us/~carl/cellmain.htm
Clone It - http://topaze.jouy.inra.fr/cgi-bin/CloneIt/CloneIt
Cloning-Ewe 2 A Case - http://powayusd.sdcoe.k12.ca.us/ewe2/
Coffee Break (NCBI) - http://www.ncbi.nlm.nih.gov/Coffeebreak/
Computational Genomics Group (Sanger) - http://genomic.sanger.ac.uk/
Computational Molecular Biology (Allison) -
http://www.cs.monash.edu.au/~lloyd/tildeStrings/index.html
Computational Resource - http://mbcr.bcm.tmc.edu/
Computers In Molecular BIology (NYU) -
http://mcrcr0.med.nyu.edu/rcr/course/index.html
Conceiving a Clone - http://library.advanced.org/24355/
Database-Biocatalysis & Biodegradation (MN) -
http://www.labmed.umn.edu/umbbd/index.html
Database-Biochemical Pathways (ExPASy) -
http://expasy.hcuge.ch/cgi-bin/search-biochem-index
Database-BMERC - http://bmerc-www.bu.edu/
Database-DNA (EBI) - http://www.ebi.ac.uk/ebi_home.html
Database-DNA (GenBank) - http://www.ncbi.nlm.nih.gov/Web/Genbank/
DataBase-DNA EST (NIH) - http://www.ncbi.nlm.nih.gov/dbEST/index.html
Database-DNA TIGR (NIH) - http://www.tigr.org/tdb/tdb.html
Database-EcoCyc Encyclopedia - http://ecocyc.panbio.com/ecocyc/
Database-GenBank - http://www.ncbi.nlm.nih.gov/Genbank/GenbankSearch.html
Database-Gene Mendel Stanford Mirror) -
http://genome-www.stanford.edu/Mendel/
Database-Genebrowser - http://www.natx.com/
Database-Genome - http://gdbwww.gdb.org/
Database-Kyoto Gene Encyclopedia - http://www.genome.ad.jp/kegg/kegg.html
Database-Mice Knockout (BioScience) -
http://www.bioscience.org/knockout/knochome.htm
Database-Mice Knockouts (NIH) -
http://www.nida.nih.gov/genetics/ko/ko-index.html
Database-Nucleic Acids - http://ndbserver.rutgers.edu/
Database-Restriction Endonuclease Buffers -
http://users.mis.net/~colinw/buffer.html
Database-SoyBase - http://probe.nal.usda.gov:8000/plant/aboutsoybase.html
Database-SRS5 Servers - http://srs.ebi.ac.uk/srs5list.html
Database-SRS6 - http://srs6.ebi.ac.uk/
Database-STD Sequences - http://www.stdgen.lanl.gov/
Database-Transcription Factors -
http://transfac.gbf-braunschweig.de/TRANSFAC/index.html
Database-Vector Sequence . - http://vectordb.atcg.com/
Database-Vectors - http://vectordb.atcg.com/
DerBrowser Genome Navigator -
http://www.mpimg-berlin-dahlem.mpg.de/~andy/GN/
Designer Genes - http://hyperion.advanced.org/18258/
DNA Activities - http://www.nih.gov/od/orda/index.htm
DNA Computers - http://dna2z.com/dnacpu/dna.html
DNA Data Bank-Japan - http://www.ddbj.nig.ac.jp/
DNA Files - http://www.dnafiles.org/home.html
DNA Fingerprinting -
http://www.biology.washington.edu/fingerprint/dnaintro.html
DNA Learning Center - http://vector.cshl.org/
DNA Patents - http://dnapatent.com/
DNA Prelude to the Symphony of Life - http://library.advanced.org/18617/
E. coli Genes & Metabolism -
http://ecocyc.pangeasystems.com/ecocyc/ecocyc.html
Functional Genomics (Childs) -
http://sequence.aecom.yu.edu/bioinf/funcgenomic.html
Genamics - http://genamics.com/
Gene Chip-Brown Lab - http://cmgm.stanford.edu/pbrown/
Gene Chip-I.M.A.G.E. Consortium -
http://www-bio.llnl.gov/bbrp/image/image.html
Gene Chip-NHGRI Microarray Project -
http://www.nhgri.nih.gov/DIR/LCG/15K/HTML/p15Ktop.html
Gene Chip-Recent Changes in CGAP -
http://www.ncbi.nlm.nih.gov//UniGene/gene_discovery.html
Gene Chips (Cornell) - http://syntom.cit.cornell.edu/chips.html
Gene Chip-Vivian Cheung's Lab - http://w95vcl.neuro.chop.edu/vcheung/
Gene Discovery - http://www.3rdmill.com/discovery.htm
Gene Family Nomenclature -
http://www.gene.ucl.ac.uk/nomenclature/genefamily.shtml
Gene School - http://library.advanced.org/19037/
GeneCards - http://bioinformatics.weizmann.ac.il/cards/
GeneMap'98 - http://www.ncbi.nlm.nih.gov/genemap/
Genetic Engineering News - http://www.genengnews.com/news1.htm
Genetic MicroSystems - http://www.geneticmicro.com/
Genetics Computer Group (GCG) - http://www.gcg.com/
Genome Links (Harvard) - http://golgi.harvard.edu/
Genome Sequencing (human) - http://www.ncbi.nlm.nih.gov/genome/seq/
Genome Systems - http://www.genomesystems.com/
Genomics (Brookhaven) - http://genome.bnl.gov/
Genomics Lexicon - http://www.phrma.org/genomics/lexicon/
Genomics-Mosquito - http://klab.agsci.colostate.edu/
Grnome-Human Resources - http://www.ncbi.nlm.nih.gov/genome/guide/
Homology Searching -
http://www.bimcore.emory.edu/Tutorials/homology/homology.html
Human cloning - http://people.delphi.com/patrickdixon/clonech.htm
Human Transcript Map - http://www.ncbi.nlm.nih.gov/science96/
Immunohistochemistry Index -
http://www.geocities.com/SiliconValley/Pines/7897/ihp.htm
Institute for Biotechnology Infor. - http://www.biotechinfo.com/
Internet for the Molecular Biologist -
http://www.horizonpress.com/gateway/iftmb.html
Labfocus - http://www.labfocus.com/
Lawrence Livermore-Biology - http://www-bio.llnl.gov/
MatInspector - http://genomatix.gsf.de/cgi-bin/matinspector/matinspector.pl
Mendelian Inheritance in Man (NCBI) - http://www3.ncbi.nlm.nih.gov/omim/
MendelWeb - http://hermes.astro.washington.edu/mirrors/MendelWeb/
Microbial Cultures, etc - http://trishul.sci.gu.edu.au/methods/Cultures/
Microbiology Jump Station - http://www.horizonpress.com/gateway/micro.html
MolBio Portal - http://www.molbio.org/
Molecular Biologist's Desk Reference -
http://molbio.info.nih.gov/molbio/desk.html
Molecular Biologist's Workbench -
http://www.embl-heidelberg.de/JaMBW/Toc.html
Molecular Biology Jump Station -
http://www.horizonpress.com/gateway/molbiol.html
Molecular Biology Links (jp) - http://www.yk.rim.or.jp/~aisoai/index.html
Molecular Biology Links (Nerd World) -
http://www.tiac.net/users/dstein/nw42.html
Molecular Biology Notebook - http://www.res.bbsrc.ac.uk/molbio/notebook.htm
Molecular Biology Resources(ANSELM) -
http://www.anselm.edu/homepage/jpitocch/resmol.html
Molecular Biology Today - http://www.molbio.net/
Molecular Biology-Really Quite Useful -
http://www.lars.bbsrc.ac.uk/plantsci/molbiol/molbiol.html
Molecular Biology-Stockholm - http://www.molbio.su.se/
Molecular Oncology - http://chroma.mbt.washington.edu/mod_www/
Multiple Alignment Resources -
http://www.techfak.uni-bielefeld.de/bcd/Curric/MulAli/welcome.html
Music DNA Algorhythms - http://algoart.com/dnamusic/
Music-Genetic - http://geneticmusic.com/dnamusic/index.htm
Nanotechnology - http://lucifer.com/~sean/n-mnt.html
National Biotechnology Info Facility - http://www.nbif.org/
Natural History of Genes - http://raven.umnh.utah.edu/
Nomenclature-Incomplete Nucleic Acid Sequences -
http://www.chem.qmw.ac.uk/iubmb/misc/naseq.html
Oligiomer Synthesis - http://www.interactiva.de/
Online Mendelian Inheritance In Man (OMIM) -
http://www3.ncbi.nlm.nih.gov/Omim/
ORNL Grail Form - http://compbio.ornl.gov/Grail-bin/EmptyGrailForm
PCR Jump Station - http://www.horizonpress.com/pcr/
PNaRM-Protein & Nucleic Acid Resources -
http://www.temple.edu/medbiochem/pnarm.html
Primer Design (Alkami) - http://www.alkami.com/refdsgn.htm
Primer Finder - http://eatworms.swmed.edu/~tim/primerfinder/
Primer3 Input - http://www-genome.wi.mit.edu/cgi-bin/primer/primer3_www.cgi
Probes-Actins - http://www.probes.com/handbook/ch11-toc.html
Probes-Alkalai Metals - http://www.probes.com/handbook/ch24-toc.html
Probes-Caged - http://www.probes.com/handbook/ch19-toc.html
Probes-Cell Viability - http://www.probes.com/handbook/ch16-toc.html
Probes-Cytoxsis - http://www.probes.com/handbook/ch17-toc.html
Probes-DNA - http://www.probes.com/handbook/ch08-toc.html
Probes-Enzymes - http://www.probes.com/handbook/ch10-toc.html
Probes-Fluorescence Applications -
http://www.probes.com/handbook/ch26-toc.html
Probes-Fluorescence - http://www.probes.com/handbook/ch01-toc.html
Probes-Membrane Tracers - http://www.probes.com/handbook/ch15-toc.html
Probes-Membranes - http://www.probes.com/handbook/ch14-toc.html
Probes-Metal Ions - http://www.probes.com/handbook/ch22-toc.html
Probes-Organelles - http://www.probes.com/handbook/ch12-toc.html
Probes-Peptide - http://www.probes.com/handbook/ch09-toc.html
Probes-pH - http://www.probes.com/handbook/ch23-toc.html
Probes-Phospholipids - http://www.probes.com/handbook/ch13-toc.html
Probes-Potentiometric - http://www.probes.com/handbook/ch25-toc.html
Probes-Reactive Oxygen Species -
http://www.probes.com/handbook/ch21-toc.html
Probes-Receptors - http://www.probes.com/handbook/ch18-toc.html
Probes-Signal Transduction - http://www.probes.com/handbook/ch20-toc.html
Protocols on the web - http://www.horizonpress.com/gateway/protocols.html
Protocols-Gene Chips - http://genome.uc.edu/genome/arrays.html
Protocols-Lab List - http://wheat.pw.usda.gov/homepage/lazo/methods/
Protocols-Molecular Biology (Dartmouth) -
http://www.dartmouth.edu/artsci/bio/ambros/protocols/molbio.html
Protocols-NOAA - http://research.nwfsc.noaa.gov/protocols.html
Protocols-NWFSC - http://research.nwfsc.noaa.gov/protocols.html
Protocols-Promega - http://www.promega.com/tbs/
Protocols-Shortcuts - http://biousa.hypermart.net/
Protocols-Technical Tips - http://tto.trends.com/
REBASE - http://rebase.neb.com/rebase/rebase.html
Restenzyme - http://www.enzim.hu/~tusi/restric/restenzyme.html
RNA World - http://www.imb-jena.de/RNA.html
Sequence Gazing - Nature Genetics -
http://genetics.nature.com/web_specials/gazing/
Software for Field Biologists -
http://www.euronet.nl/users/mbleeker/prog/soflis_e.html
Software-AnnHyb - http://annhyb.free.fr/
Software-Artemis - http://www.sanger.ac.uk/Software/Artemis/
Software-BioEdit -
http://www.mbio.ncsu.edu/RNaseP/info/programs/BIOEDIT/bioedit.html
Software-BioMOO - http://bioinformatics.weizmann.ac.il/BioMOO/
Software-BioResources - http://pantheon.yale.edu/~huckabyj/biosoft2.html
Software-Clustal W Help - http://www-igbmc.u-strasbg.fr/BioInfo/ClustalW/
Software-Colony Manager - http://www.aisle3.com/
Software-DAMBE - http://hkusub.hku.hk/~xxia/software/software.htm
Software-DNA Star - http://www.dnastar.com/products/products.html
Software-DNA_MAP - http://dscb041.sluigi.unito.it/DNA_MAP/welcome.html
Software-DNAssist - http://www.dnassist.com/
Software-DNATools - http://www.crc.dk/phys/dnatools.htm
Software-DSSP - http://www.sander.embl-heidelberg.de/dssp/
Software-EMBOSS - http://www.sanger.ac.uk/Software/EMBOSS/
Software-ForCon - http://bioc-www.uia.ac.be/u/jraes/index.html
Software-GeneDoc - http://www.cris.com/~ketchup/genedoc.shtml
Software-GeneMark - http://genemark.biology.gatech.edu/GeneMark/
Software-GenePool - http://www.ventrella.com/
Software-GeneSight - http://www.biodiscovery.com/genesight.html
Software-GeneStudio - http://www.genestudio.com/
Software-GFF2PS - http://www1.imim.es/~jabril/GFFTOOLS/GFF2PS.html
Software-HMMER - http://hmmer.wustl.edu/
Software-InforMax - http://www.informaxinc.com/
Software-Molecular Biology - http://www.cbs.dtu.dk/biolinks/software.html
Software-MOO-light -
http://www.cs.cf.ac.uk/User/Andrew.Wilson/tkMOO-light/getting_started.html
Software-OMIGA - http://www.oxmol.com/prods/omiga/
Software-PAL - http://members.tripod.de/korbi/pal/
Software-PC-Rare -
http://bioinformatics.weizmann.ac.il/mb/bioguide/pcr/PCRsofPC_Rare.html
Software-pDRAW - http://www2.crosswinds.net/~acaclone/
Software-Phylogeny Programs -
http://evolution.genetics.washington.edu/phylip/software.html
Software-Plasmid Processor - http://www.hytti.uku.fi/~oikari/plasmid.html
Software-Redasoft - http://www.redasoft.com/
Software-SAM - http://www.cse.ucsc.edu/research/compbio/sam.html
Software-Sequence Analysis - http://molbio.info.nih.gov/molbio/software.html
Software-Wise2 - http://www.sanger.ac.uk/Software/Wise2/
Synapse-The Movie - http://www.neurosci.tufts.edu/~rhammer/synapse2.html
Tools- Metabolic Pathway -
http://www.mcs.anl.gov/home/gaasterl/pathways/pathways.html
Tools-3D Alignment Visualization -
http://bibiserv.techfak.uni-bielefeld.de/visualign/
Tools-AllAll -
http://cbrg.inf.ethz.ch/subsection3_1_1.html#SECTION0001100000000000000
Tools-Biomolecular - http://www.microbiology.adelaide.edu.au/learn/index.htm
Tools-BLAST2 - http://www.blast.genome.ad.jp/
Tools-Clone It - http://topaze.jouy.inra.fr/cgi-bin/CloneIt/CloneIt
Tools-CODEHOP - http://blocks.fhcrc.org/blocks/codehop.html
Tools-Cutter - http://www.medkem.gu.se/cutter/
Tools-Divide-& Conquer Sequence Alignment -
http://bibiserv.techfak.uni-bielefeld.de/dca/
Tools-DNA human repeats - http://alces.med.umn.edu/newdst.html
Tools-DNA Translation - http://www.expasy.ch/tools/dna.html
Tools-Entrez Browser - http://www.ncbi.nlm.nih.gov/Entrez/
Tools-Entrez - http://www3.ncbi.nlm.nih.gov/Entrez/
ToolsFasta3 (EMBL) - http://www2.ebi.ac.uk/fasta3/
Tools-GeneFisher (PCR Design) -
http://bibiserv.techfak.uni-bielefeld.de/genefisher/
Tools-Kangaroo Molbio - http://www.vetvir.unizh.ch/programs.html
Tools-MEME - http://www.sdsc.edu/meme/meme/website/
Tools-PEDANT - http://pedant.mips.biochem.mpg.de/
Tools-Pedro's BioMolecular -
http://www.public.iastate.edu/~pedro/research_tools.html
Tools-Pfam - http://www.sanger.ac.uk/Software/Pfam/
Tools-PredictProtein -
http://www.embl-heidelberg.de/predictprotein/predictprotein.html
Tools-Research Sites - http://www.yk.rim.or.jp/~aisoai/molbio.html
Tools-SRSWWW (EMBL) - http://www.embl-heidelberg.de/srs5/
Tools-Tree of Life - http://phylogeny.arizona.edu/tree/phylogeny.html
Tools-WebLogo Sequences - http://www.bio.cam.ac.uk/cgi-bin/seqlogo/logo.cgi
Tutorial-BioComputing (VSNS-BCD) -
http://merlin.mbcr.bcm.tmc.edu:8001/bcd/Curric/welcome.html
Tutorial-Molecular Biology -
http://www.lifesci.ucla.edu/lscore/voh/tutorials/
Tutorial-Molecular Systematics - http://www.dbbm.fiocruz.br/james/index.html
Tutorial-Multiple alignments -
http://www.genetics.wustl.edu/eddy/publications/tigs-9808/
Tutorials & Courses - http://www.iscb.org/training.html
Tutorial-Sequence Analysis -
http://www.techfak.uni-bielefeld.de/techfak/persons/chrisb/biocourse/
UniGene-Human - http://www.ncbi.nlm.nih.gov/UniGene/index.html
Vector Table (Invitro) - http://www.invitrogen.com/vectors.html
WebGene - http://darwin.bio.geneseo.edu/~yin/WebGene/WebGene.html
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